DNA Crystallization in vivo

. Thursday, March 13, 2008
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Bacteria are some of the marvelous creations of nature. They are known for their adaptability. The humble Escherichia coli that we find in almost all the microbiology and molecular biology labs continues to surprise us with its ingenius ways of handling problems.

Under extreme stress, bacterial cells are known to take many steps to protect themselves. Abraham Minsky of the Weizmann Institute of Science in Rehovot, Israel identified an interesting defense mechanism of E.coli thats slightly different. These unicellular organisms crystallize their own DNA.
This 'novel' defence strategy was found to be the responsibility of a protein called Dps. It resembles ferritin, an iron-storage protein found in humans.

Dps is produced when the cell experiences nutritive or oxidative stress. It binds to DNA (apparently without any specificity) and promotes its crystallisation. Earlier investigations revealed another important function of the Dps protein. It sequesters iron and other metal ions that may help in the generation of free-radicals.


DNA - Dps crystals


Minsky and his collegues genetically engineered a few bacterial cells to over-produce this protein. These cells formed DNA crystals more easily and starvation was sufficient to cause crystallization of DNA. This process was also found to be reversible. "Once nutrients are supplied, [the crystals] disappear within a very short timescale, and the bacteria are viable and growing," says Minsky.

Whats remains to be explained is, how the bacterial DNA integrates itself into a crystal!

Stretching DNA on a chip

. Friday, February 29, 2008
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DNA carries all information a living organism requires for survival. Reading this information can be made much easier if you can get these 2nm wide polymer strand stretched and untangled. Researchers at Purdue University have done just that.



They have precisely placed strands of DNA on a silicon chip and then stretched out the strands so that their encoded information might be read more clearly. This may prove extremely critical in future electronic devices and computers.

Find more information here.

What made HIV infect Man?

. Wednesday, August 22, 2007
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About 4 million years ago, humans had split from apes. At this time, Chimpanzees had to go through some tough times. They were infected with a virus. Scientists discovered this when they found traces of this virus in the DNA of Chimps. This meant that this virus, called PtERV1, infected the Chimp population. Interestingly, the traces of the virus were not found in human genome.

Emerman and his team had an explanation. The humans immune to PtERV1 while Chimps had tough time fighting it. The team of researchers identified TRIM5 as the factor that helped humans protect us from the virus. Removing this protein from the cells made them vulnerable to PtVER1, which were reconstructed from Chimpanzees DNA.

Curiously, these cells were found to be less susceptible to HIV. It seems that in the process of developing resistance to one virus, the immune system of our ancestors had us vulnerable to another deadly virus, the HIV.

Journals Online

. Monday, August 6, 2007
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Science knows no boundaries!

Here are a few websites that offer free access to some journals on the world wide web!!!

Current Science

BioMedCentral

Directory of Open Access Journals

Free Medical Journals

High Wire Press

PhysNet - Physics related free-access journals

If you know any other such useful websites, please do add those links as comments...

Making alcohol the nano way!

. Sunday, July 29, 2007
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Ethanol (the alcohol) is one of the most talked about alternative for the fossil fuels. For thousands of years, alcohol has been produced from yeast. This way of using biological cells to make alcohol is not generally considered non-viable. Thats because we spend more energy than what we get.

Carbon Nano Tubes (CNTs) are tiny tubes made only of carbon atoms. These are too tiny that the properties of chemicals are often altered when they are in these tubes.
CNTs were found to catalyze the production of ethanol from carbon monoxide and hydrogen. CNTs act either as catalysts or catalyst additives.

In China, its been proven that CNTs loaded with Rhodium nanoparticles as reactors to convert the gas mixture of CO and Hydrogen into ethanol. Dr. Xinhe Bao and his team of researchers in Nano and Interfacial Catalysis Group in Chinese Academy of Sciences observed that the redox properties of metal nanoparticles are modified when they are inside CNTs.




Syngas (a mixture of CO and H2 in the ratio of 1:2) when introduced into the CNT loaded with Rhodium- Manganese catalyst, gets converted to acetaldehyde, acetic acid and ethanol very quickly. The Chinese scientists suggest that this is due to
1) a host guest interaction between CNT and Rhodium - Manganese nano particles.
2) stringent size restriction of metal particles inside CNT.
3) high affinity of H2 to the inner surfaces of CNT.